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Español: Nativo

English: Intermedio

Frances: Intermedio


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This resume was made with the R package pagedown.

Last updated on 2022-01-22.

Main

Carlos Puma

Educación

Universidad Nacional de San Agustin

Bachiller en Psicología

Arequipa, Perú

2022

Tesis: Dyadic wavelet and its application in edge detection

University of Chinese Academy of Sciences

M.S. in Bioinformatics

Beijing, China

2014

Tesis: A multi-omics study for intra-individual divergence of the distributions between mRNA isoforms in mammals

Universidad Nacional de San Agustin

Bachiller en Biología

Arequipa, Perú

2022 - 2025

Tesis: XD

Research Experience

Graduate Research Assistant

Beijing Institute of Genomics, Chinese Academy of Sciences

Beijing, China

2011 - 2014

  • Performed computational biology research towards understanding regulation of alternative splicing in human and mouse transcriptome.
  • Found EGFR pathway related mutations, aimed to understand the impacts of cancer mutations on EGFR signaling pathway.

Bioinformatican

My Health Gene Technology Co., Ltd.

Beijing, China

2015 - 2016

  • Investigated how cancer cells spread to other parts of the body at the single cell level.

Visiting Scientist

University of Alabama at Birmingham

AL, USA

2016 - 2018

  • Investigated the role of mitochondria in development of cancer.
  • Investigated the evolution of genome architecture and its role in important evolutionary events.
  • Detected thrombotic thrombocytopenic purpura related mutations in mutiple patients’ blood genome.

Professional Experience

Data Scientist, intern

SupStat Inc.

Beijing, China

2014

  • Taught R language to beginners.
  • Wrote Shiny app demos.
  • Converted statistical tutorials from SPSS to R language.

Bioinformatician

My Health Gene Technology Co., Ltd.

Beijing, China

2015 - 2016

  • Analyzed whole-exome sequencing data.
  • Wrote analysis pipelines of ChIP-seq, single cell DNA-seq and single cell RNA-seq.
  • Studied tumor metastasis and wrote research reports.
  • Also did case studies to identify the genetic defect causing rare disease.

I’m an active participant in the local R community: I’m a co-organizer of R-Ladies São Paulo since 2018, and I have taught in several meetups and workshops. All the slides are available here: beatrizmilz.com/talk/

I’m also a co-organizer of satRday São Paulo and LatinR.

GRANTS

LatinR 2019 - Travel and Conference.

useR! 2019. Diversity Scholarship - Travel and Conference.

SOFTWARE

Package {dados} - Co-Author.

Package {mananciais} - Author, maintainer.

PROGRAMMING SKILLS

R

tidyverse

Teaching Experience

Introduction to R Language for Beginners.

Instructor of R and Data Mining Training Courses at SupStat Inc.

Beijing, China

2014

Computational Biology and Bioinformatics.

Teaching assistant of GBS CB2-201 courses at UAB

AL, USA

2016 - 2017

Selected Publications and Posters

Genetic and epigenetic signals are found predictive to the distribution of intra-individual divergence of alternative splicing.

Poster for 2013 International Conference of Genomics

Qingdao, China

2014

Yu L, Chen B, Zhang Z.

ESCRT-0 complex modulates Rbf mutant cell survival by regulating Rhomboid endosomal trafficking and EGFR signaling.

J Cell Sci. 2016 May 15;129(10):2075-84.

N/A

2016

Sheng Z, Yu L, Zhang T, Pei X, Li X, Zhang Z and Du W.